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Everything about PDBbind database
The PDBbind database is a comprehensive collection of experimentally measured binding affinity data for the protein-ligand complexes deposited in the Protein Data Bank (PDB). It thus provides a link between energetic and structural information of protein-ligand complexes, which is of great value to various studies on molecular recognition occurred in biological systems. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: PDBbind databaseA 5-minute orientation
- Read the landmark paper: The PDBbind Database: Collection of Binding Affinities for Protein−Ligand Complexes with Known Three-Dimensional StructuresCited 1,095 times
- Go sideways: BindingDBA closely related topic
- Go sideways: Scoring functions for dockingA closely related topic
📖 Definitions
No dictionary entry for this exact phrase.
🗂️ The subject at a glance
🏆 Landmark papers (most cited)
The PDBbind Database: Collection of Binding Affinities for Protein−Ligand Complexes with Known Three-Dimensional Structures
The PDBbind Database: Methodologies and Updates
PDB-wide collection of binding data: current status of the PDBbind database
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
A Physics-Guided Neural Network for Predicting Protein–Ligand Binding Free Energy: From Host–Guest Systems to the PDBbind Database
Can We Still Trust Docking Results? An Extension of the Applicability of DockBench on PDBbind Database
The impact of curation errors in the PDBBind Database on machine learning predictions of protein–protein binding affinity
📚 Books worth reading
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🔗 Related topics
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