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Everything about BindingDB
BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of proteins considered to be candidate drug-targets with ligands that are small, drug-like molecules. As of March, 2011, BindingDB contains about 650,000 binding data, for 5,700 protein targets and 280,000 small molecules. BindingDB also includes a small collection of host–guest binding data of interest to chemists studying supramolecular systems. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: BindingDBA 5-minute orientation
- Read the landmark paper: BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinitiesCited 2,003 times
- Go sideways: Docking (molecular)A closely related topic
- Go sideways: Drug designA closely related topic
📖 Definitions
No dictionary entry for this exact phrase.
🗂️ The subject at a glance
🏆 Landmark papers (most cited)
BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities
BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology
BindingDB in 2024: a FAIR knowledgebase of protein-small molecule binding data
BindingDB: A Web-Accessible Molecular Recognition Database
BindingDB and ChEMBL: online compound databases for drug discovery
Connecting proteins with drug-like compounds: Open source drug discovery workflows with BindingDB and KNIME
Screening of BindingDB database ligands against EGFR, HER2, Estrogen, Progesterone and NF-κB receptors based on machine learning and molecular docking
BindingDB: A Protein-Ligand Database for Drug Discovery
📚 Books worth reading
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🔗 Related topics
- Docking (molecular) In the field of molecular modeling, docking is a method which predicts the preferred orientation of one molecule to a second when a ligand and a target…
- Drug design Drug design, often referred to as rational drug design or simply rational design, is the inventive process of finding new medications based on the knowledge…
- Scoring functions for docking In the fields of computational chemistry and molecular modelling, scoring functions are mathematical functions used to approximately predict the binding…
- Virtual screening Virtual screening (VS) is a computational technique used in drug discovery to search libraries of small molecules in order to identify those structures…
- Molecular Operating Environment Molecular Operating Environment (MOE) is a drug discovery software platform that integrates visualization, modeling and simulations, as well as methodology…
- PDBbind database The PDBbind database is a comprehensive collection of experimentally measured binding affinity data (Kd, Ki, and IC50) for the protein-ligand complexes…
- Ligand (biochemistry) In biochemistry and pharmacology, a ligand is a substance that forms a complex with a biomolecule to serve a biological purpose. The etymology stems from…
- Chemoproteomics Chemoproteomics (also known as chemical proteomics) entails a broad array of techniques used to identify and interrogate protein-small molecule interactions…