Everything about Transposable element
DNA sequence that jumps/transposes within a genome
Transposable elements (TEs), also known as transposons, jumping genes, or mobile genetic elements, are DNA sequences that can change their position, or translocate, within a genome. TEs were first identified via genetic studies in maize by Barbara McClintock, a discovery for which she was awarded the 1983 Nobel Prize in Physiology or Medicine. TEs are found in most species across all branches of the tree of life. Currently there are two classifications of TEs: Class I and Class II TEs. Class I TEs or retrotransposons, generally function via utilization of reverse transcription to "copy and paste" themselves into a different area of the genome. Class II TEs or DNA transposons, encode for the protein transposase, which they require for insertion, excision, or other TE functions. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: Transposable elementA 5-minute orientation
- Skim a recent paper: Roles of transposable elements in the regulation of mammalian transcriptionInfluential work since 2022
- Pick up a classic book: Survival of the SickestThe most-reprinted book on the subject
- Read the landmark paper: RepeatModeler2 for automated genomic discovery of transposable element familiesCited 4,256 times
- Go sideways: RetrotransposonA closely related topic
- Go sideways: LINE1A closely related topic
📖 Definitions
Noun Synonym of transposon.
🏆 Landmark papers (most cited)
RepeatModeler2 for automated genomic discovery of transposable element families
A unified classification system for eukaryotic transposable elements
Genetic Transformation of Drosophila with Transposable Element Vectors
Transposable elements and the epigenetic regulation of the genome
Transposable Elements: Targets for Early Nutritional Effects on Epigenetic Gene Regulation
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
🆕 Influential since 2022
Roles of transposable elements in the regulation of mammalian transcription
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline
Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
Taming transposable elements in vertebrates: from epigenetic silencing to domestication
Transposable elements as essential elements in the control of gene expression
📚 Books worth reading
Survival of the SickestSharon Moalem, Jonathan Prince · 2007
Bacterial Integrative Mobile Genetic ElementsAdam P. Roberts, Peter Mullany · 2013
Mobile DNA IIINancy Lynn Craig, Chandler, Michael (Molecular microbiologist) · 2015
TranspositionSociety for General Microbiology. Symposium · 1988- 📕Mobile genetic elements in metazoan parasitesPaul J. Brindley · 2009
Lateral DNA TransferFrederic Bushman · 2001
Microbial megaplasmidsEdward Schwartz · 2009- 📕Plasmids and transposonsSymposium on the Scientific Basis of Medicine Dalhousie University 1979. · 1980
Ranked by number of editions on Open Library, a rough measure of how lasting a book is.
🔗 Related topics
- Retrotransposon Retrotransposons (also called class I transposable elements) are mobile elements which move in the host genome by converting their transcribed RNA into…
- LINE1 LINE1 (an abbreviation of Long interspersed nuclear element-1, also known as L1 and LINE-1) is a family of related class I transposable elements in the…
- Long interspersed nuclear element Long interspersed nuclear elements (LINEs) (also known as long interspersed nucleotide elements or long interspersed elements) are a group of non-LTR (long…
- DNA transposon DNA transposons are DNA sequences, sometimes referred to "jumping genes", that can move and integrate to different locations within the genome. They are…
- Tc1/mariner Tc1/mariner is a class and superfamily of interspersed repeats DNA (Class II) transposons. The elements of this class are found in all animals, including…
- Knockout rat A knockout rat is a genetically engineered rat with a single gene turned off through a targeted mutation (gene trapping) used for academic and pharmaceutical…
- P element P elements are transposable elements that were discovered in Drosophila as the causative agents of genetic traits called hybrid dysgenesis. The transposon…
- Exon shuffling Exon shuffling is a molecular mechanism for the formation of new genes. It is a process through which two or more exons from different genes can be brought…