Everything about PathVisio

🧭 Start here: a 6-step reading path

1. Read the overview: PathVisioA 5-minute orientation
2. Read the landmark paper: PathVisio 3: An Extendable Pathway Analysis ToolboxCited 440 times
3. Go sideways: WikiPathwaysA closely related topic
4. Go sideways: BioPAXA closely related topic

🏆 Landmark papers (most cited)

• PathVisio 3: An Extendable Pathway Analysis Toolbox

  Martina Kutmon, Martijn P. van Iersel, Anwesha Bohler · 2015 · PLOS Computational Biology · 440 citations

• Presenting and exploring biological pathways with PathVisio

  Martijn P van Iersel, Thomas Kelder, Alexander R Pico · 2008 · BMC Bioinformatics · 291 citations

• PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)

  Augustin Luna, Margot L. Sunshine, Martijn P. van Iersel · 2011 · Bioinformatics · 14 citations

• PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways

  Jake Y. Fried, Martijn P. van Iersel, Mirit I. Aladjem · 2013 · Bioinformatics · 9 citations

• PathVisio-Validator: a rule-based validation plugin for graphical pathway notations

  Kumar Chandan, Martijn P. van Iersel, Mirit I. Aladjem · 2011 · Bioinformatics · 5 citations

• Bioinformatics for the NuGO proof of principle study: analysis of gene expression in muscle of ApoE3*Leiden mice on a high-fat diet using PathVisio

  Susan L. M. Coort, Martijn P. van Iersel, Marjan van Erk · 2008 · Genes & Nutrition · 5 citations

• PathVisio Analysis: An Application Targeting the miRNA Network Associated with the p53 Signaling Pathway in Osteosarcoma

  MERVIN BURNETT, VITO RODOLICO, FAN SHEN · 2021 · BIOCELL · 1 citations

📚 Books worth reading

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🔗 Related topics

• WikiPathways WikiPathways is a community resource for contributing and maintaining content dedicated to biological pathways. Any registered WikiPathways user can contribute…
• BioPAX BioPAX (Biological Pathway Exchange) is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level. Its major…
• Reactome Reactome is a free online database of biological pathways. It is manually curated and authored by PhD-level biologists, in collaboration with Reactome…
• Cytoscape Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles…
• GenMAPP GenMAPP (Gene Map Annotator and Pathway Profiler) is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in…
• GeWorkbench geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programmin…
• National Center for Integrative Biomedical Informatics The National Center for Integrative Biomedical Informatics (NCIBI) is one of seven National Centers for Biomedical Computing funded by the National Institutes…
• List of systems biology visualization software Koblitz, Julia; Schomburg, Dietmar; Neumann-Schaal, Meina (2020). "MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context"…