Everything about GenMAPP
Open-source bioinformatics software for genomics
GenMAPP is a free, open-source bioinformatics software tool designed to visualize and analyze genomic data in the context of pathways, connecting gene-level datasets to biological processes and disease. First created in 2000, GenMAPP is developed by an open-source team based in an academic research laboratory. GenMAPP maintains databases of gene identifiers and collections of pathway maps in addition to visualization and analysis tools. Together with other public resources, GenMAPP aims to provide the research community with tools to gain insight into biology through the integration of data types ranging from genes to proteins to pathways to disease. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: GenMAPPA 5-minute orientation
- Read the landmark paper: GenMAPP, a new tool for viewing and analyzing microarray data on biological pathwaysCited 730 times
- Go sideways: Rat Genome DatabaseA closely related topic
- Go sideways: GeWorkbenchA closely related topic
📖 Definitions
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🗂️ The subject at a glance
🏆 Landmark papers (most cited)
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
GenMAPP 2: new features and resources for pathway analysis
Use of GenMAPP and MAPPFinder to analyse pathways involved in chickens infected with the protozoan parasite Eimeria
Extending XMLPipeDB with GO Slim to Update the GenMAPP‐compatible Gene Database for Budding Yeast, Saccharomyces cerevisiae , for the Analysis of DNA Microarray Data
Extending XMLPipeDB to create GenMAPP‐compatible gene databases for the analysis of DNA microarray data from human pathogens
An Introduction to Pathway Analysis with GenMAPP
📚 Books worth reading
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🔗 Related topics
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- Gene set enrichment analysis Gene set enrichment analysis (GSEA) (also called functional enrichment analysis or pathway enrichment analysis) is a method to identify classes of genes…
- BioPAX BioPAX (Biological Pathway Exchange) is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level. Its major…
- WikiPathways WikiPathways is a community resource for contributing and maintaining content dedicated to biological pathways. Any registered WikiPathways user can contribute…
- Bioconductor Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments…
- QIAGEN Silicon Valley QIAGEN Digital Insights (formerly Ingenuity Systems) is a company based in Redwood City, California, USA, that develops software to analyze complex biological…