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Everything about MA plot
Diagram in computational biology
Within computational biology, an MA plot is an application of a Bland–Altman plot for visual representation of genomic data. The plot visualizes the differences between measurements taken in two samples, by transforming the data onto M and A scales, then plotting these values. Though originally applied in the context of two channel DNA microarray gene expression data, MA plots are also used to visualise high-throughput sequencing analysis. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: MA plotA 5-minute orientation
- Skim a recent paper: Tafel Slope Plot as a Tool to Analyze Electrocatalytic ReactionsInfluential work since 2022
- Pick up a classic book: Spectacular bodiesThe most-reprinted book on the subject
- Read the landmark paper: Trim and Fill: A Simple Funnel‐Plot–Based Method of Testing and Adjusting for Publication Bias in Meta‐AnalysisCited 12,418 times
- Go sideways: Microarray analysis techniquesA closely related topic
- Go sideways: BioconductorA closely related topic
📖 Definitions
No dictionary entry for this exact phrase.
🗂️ The subject at a glance
🏆 Landmark papers (most cited)
Trim and Fill: A Simple Funnel‐Plot–Based Method of Testing and Adjusting for Publication Bias in Meta‐Analysis
Recommendations for examining and interpreting funnel plot asymmetry in meta-analyses of randomised controlled trials
The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets
X-ray analysis of ZnO nanoparticles by Williamson–Hall and size–strain plot methods
Violin Plots: A Box Plot-Density Trace Synergism
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
Accurately extracting the signature of intermolecular interactions present in the NCI plot of the reduced density gradient versus electron density
The case of the misleading funnel plot
🆕 Influential since 2022
Tafel Slope Plot as a Tool to Analyze Electrocatalytic Reactions
Limitations of the Tauc Plot Method
The use of X-ray diffraction peak profile analysis to determine the structural parameters of cobalt ferrite nanoparticles using Debye-Scherrer, Williamson-Hall, Halder-Wagner and Size-strain plot: Different precipitating agent approach
Dispensability of the conventional Tauc’s plot for accurate bandgap determination from UV–vis optical diffuse reflectance data
Novel rod-like [Cu(phen)2(OAc)]·PF6 complex for high-performance visible-light-driven photocatalytic degradation of hazardous organic dyes: DFT approach, Hirshfeld and fingerprint plot analysis
📚 Books worth reading
Spectacular bodiesYvonne Tasker · 1993
Ranked by number of editions on Open Library, a rough measure of how lasting a book is.
🔗 Related topics
- Microarray analysis techniques Microarray analysis techniques are used in interpreting the data generated from experiments on DNA (Gene chip analysis), RNA, and protein microarrays,…
- Bioconductor Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments…
- RA plot The ratio average (RA) plot is an integer-based version of an MA plot for visualizing two-condition count data. Its distinctive arrow-like shape derives…
- DNA microarray A DNA microarray (also commonly known as a DNA chip or biochip) is a collection of microscopic DNA spots attached to a solid surface. Scientists use DNA…
- Lumi (software) lumi is a free, open source and open development software project for the analysis and comprehension of Illumina expression and methylation microarray…
- Illumina Methylation Assay The Illumina Methylation Assay using the Infinium I platform uses 'BeadChip' technology[clarification needed] to generate a comprehensive genome-wide profiling…
- Jean Yang Jean Yee Hwa Yang FRSN is an Australian statistician known for her work on variance reduction for microarrays, and for inferring proteins from mass spectrometry…
- Fold change Fold change is a measure describing how much a quantity changes between an original and a subsequent measurement. In bioinformatics that utilize case-control…