Everything about R package

🧭 Start here: a 6-step reading path

1. Read the overview: R packageA 5-minute orientation
2. Skim a recent paper: The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package*Influential work since 2022
3. Pick up a classic book: Introductory time series with RThe most-reprinted book on the subject
4. Read the landmark paper: edgeR : a Bioconductor package for differential expression analysis of digital gene expression dataCited 41,337 times
5. Go sideways: R (programming language)A closely related topic
6. Go sideways: Rnn (software)A closely related topic

🏆 Landmark papers (most cited)

• edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

  Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · 2009 · Bioinformatics · 41,337 citations

• clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

  Guangchuang Yu, Li-Gen Wang, Yanyan Han · 2012 · OMICS: A Journal of Integrative Biology · 34,788 citations

• WGCNA: an R package for weighted correlation network analysis

  Peter Langfelder, Steve Horvath · 2008 · BMC Bioinformatics · 25,286 citations

• lavaan : An R Package for Structural Equation Modeling

  Yves Rosseel · 2012 · Journal of Statistical Software · 24,625 citations

• lmerTest Package: Tests in Linear Mixed Effects Models

  Alexandra Kuznetsova, Per B. Brockhoff, Rune H. B. Christensen · 2017 · Journal of Statistical Software · 22,677 citations

• phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

  Paul J. McMurdie, Susan Holmes · 2013 · PLoS ONE · 21,262 citations

• Conducting Meta-Analyses in R with the metafor Package

  Wolfgang Viechtbauer · 2010 · Journal of Statistical Software · 17,869 citations

• Astropy: A community Python package for astronomy

  The Astropy Collaboration, Thomas P. Robitaille, Erik J. Tollerud · 2013 · Astronomy & Astrophysics · 14,238 citations

🆕 Influential since 2022

• The Astropy Project: Sustaining and Growing a Community-oriented Open-source Project and the Latest Major Release (v5.0) of the Core Package*

  The Astropy Collaboration, Adrian M. Price-Whelan, Pey Lian Lim · 2022 · The Astrophysical Journal · 5,591 citations

• PRISMA2020 : An R package and Shiny app for producing PRISMA 2020‐compliant flow diagrams, with interactivity for optimised digital transparency and Open Synthesis

  Neal R. Haddaway, Matthew J. Page, Chris C. Pritchard · 2022 · Campbell Systematic Reviews · 3,265 citations

• GSEApy: a comprehensive package for performing gene set enrichment analysis in Python

  Zhuoqing Fang, Xinyuan Liu, Gary Peltz · 2022 · Bioinformatics · 1,448 citations

• Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package

  Jiangshan Lai, Yi Zou, Jinlong Zhang · 2022 · Methods in Ecology and Evolution · 1,191 citations

• ggtranscript : an R package for the visualization and interpretation of transcript isoforms using ggplot2

  Emil K Gustavsson, David Zhang, Regina H Reynolds · 2022 · Bioinformatics · 771 citations

📚 Books worth reading

• Introductory time series with RPaul S. P. Cowpertwait, Andrew V. Metcalfe · 2009
• Sams teach yourself SAP in 24 hoursGeorge W. Anderson, Anderson, George · 2005
• Design of Analog CMOS Integrated CircuitsBehzad Razavi · 2000
• Analysis of integrated and cointegrated time series with RBernhard Pfaff · 2006
• SAP Business oneT. Teufel, Thomas Teufel · 2005
• Quality management with SAP R/3Michael Hölzer, Michael Holzer · 2000
• The packaging designer's book of patternsLazlo Roth, George L. Wybenga · 2000
• Sous-Vide CuisineJoan Roca · 2005

Ranked by number of editions on Open Library, a rough measure of how lasting a book is.

🔗 Related topics

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