Everything about PyMOL
Biology structure visualization software
PyMOL is a source-available molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLan Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities. It is currently commercialized by Schrödinger, Inc. As the original software license was a permissive licence, they were able to remove it; new versions are no longer released under the Python license, but under a custom license, and some of the source code is no longer released. PyMOL can produce high-quality 3D images of small molecules and biological macromolecules, such as proteins. PyMOL is widely used. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: PyMOLA 5-minute orientation
- Skim a recent paper: DockingPie: a consensus docking plugin for PyMOLInfluential work since 2022
- Read the landmark paper: Ligand docking and binding site analysis with PyMOL and Autodock/VinaCited 2,449 times
- Go sideways: List of formerly open-source or free softwareA closely related topic
- Go sideways: PyQtA closely related topic
📖 Definitions
No dictionary entry for this exact phrase.
🗂️ The subject at a glance
🏆 Landmark papers (most cited)
Ligand docking and binding site analysis with PyMOL and Autodock/Vina
Using PyMOL as a platform for computational drug design
Computer-aided drug design platform using PyMOL
Geo-Measures: A PyMOL plugin for protein structure ensembles analysis
Boosting the Full Potential of PyMOL with Structural Biology Plugins
PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL
MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL
PyMOL and Inkscape Bridge the Data and the Data Visualization
🆕 Influential since 2022
DockingPie: a consensus docking plugin for PyMOL
LModeA-nano: A PyMOL Plugin for Calculating Bond Strength in Solids, Surfaces, and Molecules via Local Vibrational Mode Analysis
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
MDBuilder: a PyMOL plugin for the preparation of molecular dynamics simulations
📚 Books worth reading
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🔗 Related topics
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