Everything about GenePattern

🧭 Start here: a 6-step reading path

1. Read the overview: GenePatternA 5-minute orientation
2. Skim a recent paper: Abstract 1903: GenePattern Notebook: An integrative analytical environment for cancer researchInfluential work since 2022
3. Read the landmark paper: GenePattern 2.0Cited 1,943 times
4. Go sideways: Scientific workflow systemA closely related topic
5. Go sideways: Galaxy (computational biology)A closely related topic

🏆 Landmark papers (most cited)

• GenePattern 2.0

  Michael Reich, Ted Liefeld, Joshua Gould · 2006 · Nature Genetics · 1,943 citations

• Implementation of GenePattern within the Stanford Microarray Database

  J. Hubble, J. Demeter, H. Jin · 2009 · Nucleic Acids Research · 84 citations

• Using GenePattern for Gene Expression Analysis

  Heidi Kuehn, Arthur Liberzon, Michael Reich · 2008 · Current Protocols in Bioinformatics · 42 citations

• InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor

  Alain Coletta, Colin Molter, Robin Duqué · 2012 · Genome Biology · 40 citations

• The GenePattern Notebook Environment

  Michael Reich, Thorin Tabor, Ted Liefeld · 2017 · Cell Systems · 38 citations

• Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

  Jeanette A. I. Johnson, Ashley P. Tsang, Jacob T. Mitchell · 2023 · Nature Protocols · 28 citations

• NuGO contributions to GenePattern

  P. J. De Groot, C. Reiff, C. Mayer · 2008 · Genes & Nutrition · 24 citations

• GenePattern flow cytometry suite

  Josef Spidlen, Aaron Barsky, Karin Breuer · 2013 · Source Code for Biology and Medicine · 16 citations

🆕 Influential since 2022

• Abstract 1903: GenePattern Notebook: An integrative analytical environment for cancer research

  Michael M. Reich, Thorin Tabor, Edwin Juarez · 2022 · Cancer Research · 1 citations

• Abstract 7426: The GenePattern ecosystem for cancer bioinformatics

  Michael M. Reich, Thorin Tabor, John Liefeld · 2024 · Cancer Research · 0 citations

📚 Books worth reading

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🔗 Related topics

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