Live briefing
Everything about CellProfiler
Image processing software
CellProfiler is free, open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. Advanced algorithms for image analysis are available as individual modules that can be placed in sequential order together to form a pipeline; the pipeline is then used to identify and measure biological objects and features in images, particularly those obtained through fluorescence microscopy. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: CellProfilerA 5-minute orientation
- Skim a recent paper: Autophagy profiling in single cells with open source CellProfiler-based image analysisInfluential work since 2022
- Read the landmark paper: CellProfiler: image analysis software for identifying and quantifying cell phenotypesCited 5,139 times
- Go sideways: Anne E. CarpenterA closely related topic
- Go sideways: Cell paintingA closely related topic
📖 Definitions
No dictionary entry for this exact phrase.
🏆 Landmark papers (most cited)
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
CellProfiler 4: improvements in speed, utility and usability
CellProfiler 3.0: Next-generation image processing for biology
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
CellProfiler™: Free, Versatile Software for Automated Biological Image Analysis
CellProfiler Analyst: data exploration and analysis software for complex image-based screens
CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis
CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets
🆕 Influential since 2022
Autophagy profiling in single cells with open source CellProfiler-based image analysis
Automated segmentation and quantitative analysis of organelle morphology, localization and content using CellProfiler
CellProfiler plugins – An easy image analysis platform integration for containers and Python tools
An image analysis protocol using CellProfiler for automated quantification of post-ischemic cardiac parameters
A User-Friendly Approach for Routine Histopathological and Morphometric Analysis of Skeletal Muscle Using CellProfiler Software
📚 Books worth reading
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🔗 Related topics
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