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Everything about CellML

Coding language

CellML is an XML based markup language for describing mathematical models. Although it could theoretically describe any mathematical model, it was originally created with the Physiome Project in mind, and hence used primarily to describe models relevant to the field of biology. This is reflected in its name CellML, although this is simply a name, not an abbreviation. CellML is growing in popularity as a portable description format for computational models, and groups throughout the world are using CellML for modelling or developing software tools based on CellML. CellML is similar to Systems Biology Markup Language SBML but provides greater scope for model modularity and reuse, and is not specific to descriptions of biochemistry. Wikipedia →

🧭 Start here: a 6-step reading path

  1. Read the overview: CellMLA 5-minute orientation
  2. Skim a recent paper: cellmlmanip and chaste_codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated JacobiansInfluential work since 2022
  3. Read the landmark paper: CellML: its future, present and pastCited 379 times
  4. Go sideways: LibSBMLA closely related topic
  5. Go sideways: SBMLA closely related topic

📖 Definitions

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🗂️ The subject at a glance

  1. History
  2. The structure of a CellML model
  3. Specifications
  4. CellML.org

🏆 Landmark papers (most cited)

🆕 Influential since 2022

📚 Books worth reading

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🔗 Related topics