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Everything about Biological database
Database of biological information
Biological databases are libraries of biological sciences, collected from scientific experiments, published literature, high-throughput experiment technology, and computational analysis. They contain information from research areas including genomics, proteomics, metabolomics, microarray gene expression, and phylogenetics. Information contained in biological databases includes gene function, structure, localization, clinical effects of mutations as well as similarities of biological sequences and structures. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: Biological databaseA 5-minute orientation
- Skim a recent paper: KEGG: biological systems database as a model of the real worldInfluential work since 2022
- Pick up a classic book: BioinformaticsThe most-reprinted book on the subject
- Read the landmark paper: Reactome: a database of reactions, pathways and biological processesCited 1,505 times
- Go sideways: European Bioinformatics InstituteA closely related topic
- Go sideways: International Nucleotide Sequence Database CollaborationA closely related topic
📖 Definitions
No dictionary entry for this exact phrase.
🏆 Landmark papers (most cited)
Reactome: a database of reactions, pathways and biological processes
Reference database of Raman spectra of biological molecules
bioDBnet: the biological database network
SIGNOR: a database of causal relationships between biological entities
Levenshtein Distance, Sequence Comparison and Biological Database Search
CottonMD: a multi-omics database for cotton biological study
Polytraits: A database on biological traits of marine polychaetes
Database Commons: A Catalog of Worldwide Biological Databases
🆕 Influential since 2022
KEGG: biological systems database as a model of the real world
BIOPEP-UWM Virtual—A Novel Database of Food-Derived Peptides with In Silico-Predicted Biological Activity
MODMS: a multi-omics database for facilitating biological studies on alfalfa (Medicago sativa L.)
Comprehensive mapping of the AOP-Wiki database: identifying biological and disease gaps
Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database
📚 Books worth reading
BioinformaticsAndreas D. Baxevanis, B. F. Francis Ouellette · 2001
The Elements of Statistical LearningTrevor Hastie, Robert Tibshirani · 2001
The ethics and governance of human genetic databasesMatti Häyry, Ruth Chadwick · 2003
Introduction to bioinformaticsArthur M. Lesk · 2002
Data mining techniques for the life sciencesOliviero Carugo · 2009
Collecting ExperimentsBruno J. Strasser · 2019
Bio-inspired computing and communicationWorkshop on Bio-Inspired Design of Networks (1st 2007 Cambridge, England) · 2008
Approaches in Integrative BioinformaticsMing Chen, Ralf Hofestädt · 2014
Ranked by number of editions on Open Library, a rough measure of how lasting a book is.
🔗 Related topics
- European Bioinformatics Institute The European Bioinformatics Institute (EMBL-EBI) is an intergovernmental organization (IGO) which, as part of the European Molecular Biology Laboratory…
- International Nucleotide Sequence Database Collaboration The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and…
- European Nucleotide Archive The European Nucleotide Archive (ENA) is a repository providing free and unrestricted access to annotated DNA and RNA sequences. It also stores complementary…
- Protein Data Bank The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which…
- Rolf Apweiler Rolf Apweiler is a German bioinformatician who was director and associate director of European Bioinformatics Institute (EBI) part of the European Molecular…
- SMIM23 SMIM23 or Small Integral Membrane Protein 23 is a protein which in humans is encoded by the SMIM23 gene (previously c5orf50). The longer mRNA isoform is…
- LRRIQ3 LRRIQ3 (Leucine-rich repeats and IQ motif containing 3), which is also known as LRRC44, is a protein that in humans is encoded by the LRRIQ3 gene. It is…
- List of biological databases Biological databases are stores of biological information. The journal Nucleic Acids Research regularly publishes special issues on biological databases…