Everything about BioPerl

🧭 Start here: a 6-step reading path

1. Read the overview: BioPerlA 5-minute orientation
2. Pick up a classic book: Beautiful CodeThe most-reprinted book on the subject
3. Read the landmark paper: The Bioperl Toolkit: Perl Modules for the Life SciencesCited 1,294 times
4. Go sideways: Lincoln SteinA closely related topic
5. Go sideways: BiopythonA closely related topic

🏆 Landmark papers (most cited)

• The Bioperl Toolkit: Perl Modules for the Life Sciences

  Jason E. Stajich, David Block, Kris Boulez · 2002 · Genome Research · 1,294 citations

• Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

  Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar · 2014 · Bioinformatics · 36 citations

• BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

  Yözen Hernández, Rocky Bernstein, Pedro Pagan · 2018 · BMC Bioinformatics · 12 citations

• Benchmarking of BioPerl, Perl, BioJava, Java, BioPython, and Python for Primitive Bioinformatics Tasks and Choosing a Suitable Language

  Tae-Wan Ryu · 2009 · International Journal of Contents · 3 citations

• The Bioperl project

  Jason Stajich, Ewan Birney · 2000 · ACM SIGBIO Newsletter · 3 citations

• Comparative Analysis of Software Repository Metrics in BioPerl, BioJava and BioRuby

  M. Rahmani, D. Bastola, L. Najjar · 2012 · Procedia Computer Science · 1 citations

• Based on BioPerl Realize Accurately Download LEA Gene Sequences from the NCBI

  晓婧 张 · 2014 · Hans Journal of Computational Biology · 1 citations

• Persistent BioPerl

  Hilmar Lapp · 2007 · Nature Precedings · 0 citations

📚 Books worth reading

• Beautiful CodeAndy Oram, Greg Wilson · 2007
• 📕Using BioperlInc O'Reilly Media · 2001
• 📕Basics in Perl and BioperlKaladhar Dsvgk · 2014
• Plant bioinformaticsDavid Edwards · 2007

Ranked by number of editions on Open Library, a rough measure of how lasting a book is.

🔗 Related topics

• Lincoln Stein Lincoln David Stein is an American computational biologist and bioinformatician known for his contributions to community data resources, genome informatics…
• Biopython Biopython is an open-source collection of non-commercial Python modules for computational biology and bioinformatics. It makes robust and well-tested code…
• BioJava BioJava is an open-source software project dedicated to providing Java tools for processing biological data. BioJava is a set of library functions written…
• List of RNA-Seq bioinformatics tools RNA-Seq is a technique that allows transcriptome studies (see also Transcriptomics technologies) based on next-generation sequencing technologies. This…
• Bioconductor Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments…
• Ensembl genome database project Ensembl genome database project is a scientific project at the European Bioinformatics Institute, which provides a centralized resource for geneticists…
• RNA-Seq RNA-Seq (short for RNA sequencing) is a next-generation sequencing (NGS) technique used to quantify and identify RNA molecules in a biological sample,…
• UCSC Genome Browser The UCSC Genome Browser is an online and downloadable genome browser hosted by the University of California, Santa Cruz (UCSC). It is an interactive website…