Everything about BioModels

🧭 Start here: a 6-step reading path

1. Read the overview: BioModelsA 5-minute orientation
2. Skim a recent paper: Ecotoxicological study of bio-based deep eutectic solvents formed by glycerol derivatives in two aquatic biomodelsInfluential work since 2022
3. Pick up a classic book: Biomechatronics in Medical RehabilitationThe most-reprinted book on the subject
4. Read the landmark paper: BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systemsCited 611 times
5. Go sideways: MIRIAM RegistryA closely related topic
6. Go sideways: Nicolas Le NovèreA closely related topic

🏆 Landmark papers (most cited)

• BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

  N. Le Novere · 2006 · Nucleic Acids Research · 611 citations

• BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

  Chen Li, Marco Donizelli, Nicolas Rodriguez · 2010 · BMC Systems Biology · 454 citations

• BioModels: ten-year anniversary

  Vijayalakshmi Chelliah, Nick Juty, Ishan Ajmera · 2014 · Nucleic Acids Research · 275 citations

• BioModels—15 years of sharing computational models in life science

  Rahuman S Malik-Sheriff, Mihai Glont, Tung V N Nguyen · 2019 · Nucleic Acids Research · 198 citations

• BioModels: expanding horizons to include more modelling approaches and formats

  Mihai Glont, Tung V N Nguyen, Martin Graesslin · 2017 · Nucleic Acids Research · 100 citations

• A paradigm shift in surgical planning and simulation using 3Dgraphy: Experience of first 50 surgeries done using 3D-printed biomodels

  Vaibhav Bagaria, Kshitij Chaudhary · 2017 · Injury · 83 citations

• Biomodels of Bone: A Review

  S. Lohfeld, V. Barron, P. E. McHugh · 2005 · Annals of Biomedical Engineering · 52 citations

• BioModels: Content, Features, Functionality, and Use

  N Juty, R Ali, M Glont · 2015 · CPT: Pharmacometrics & Systems Pharmacology · 48 citations

🆕 Influential since 2022

• Ecotoxicological study of bio-based deep eutectic solvents formed by glycerol derivatives in two aquatic biomodels

  Mª Pilar Garralaga, Laura Lomba, Alejandro Leal-Duaso · 2022 · Green Chemistry · 27 citations

• Recent Advances of PDMS In Vitro Biomodels for Flow Visualizations and Measurements: From Macro to Nanoscale Applications

  Andrews Souza, Glauco Nobrega, Lucas B. Neves · 2024 · Micromachines · 20 citations

• Advances in bioengineering pancreatic tumor-stroma physiomimetic Biomodels

  Maria V. Monteiro, Luís P. Ferreira, Marta Rocha · 2022 · Biomaterials · 17 citations

• Comparative study of biomodels manufactured using 3D printing techniques for surgical planning and medical training

  M.V. Requena-Pérez, P. Andrés-Cano, L. Galán-Romero · 2024 · Expert Review of Medical Devices · 8 citations

• Principles of Creation of a Genetic Engineering Construction for Obtaining Humanized Transgenic Mice with <i>HLA-C*07:02:01:01</i>, as a Promote of Innovative Transgenic and Knockout Biomodels

  N. N. Karkischenko, V. N. Lazarev, V. A. Manuvera · 2024 · Journal Biomed · 7 citations

📚 Books worth reading

• Biomechatronics in Medical RehabilitationShane (S.Q.) Xie, Wei Meng · 2017
• Dynamic Biosystem Modeling & Simulation Methodology - Integrated & AccessibleDistefano, Joseph, 3rd, Distefano, Joseph, 3rd · 2019
• 📕Menschliche OsteozytenkulturenAchim Battmann · 1991
• 📕II Curso sobre Biomodelos de ExperimentaciónCurso sobre Biomodelos de Experimentación (2nd 1997 San Juan, Costa Rica) · 1997
• 📕Einfluss von Calcitrol und TGF[beta] auf Osteosarkomzellinien und humane OsteoblastenAnke (Tiedemann) Battmann · 1996
• DYNAMIC BIOSYSTEM MODELING & SIMULATION METHODOLOGY : INTEGRATED & ACCESSIBLE - THIRD EDITIONJoseph DiStefano III · 2023
• 📕Nutrition and physical activity in aging, obesity, and cancerInternational Conference on Nutrition and Physical Activity in Aging, Obesity, and Cancer (2nd 2011 Kyŏngju-si, Korea) · 2011

Ranked by number of editions on Open Library, a rough measure of how lasting a book is.

🔗 Related topics

• MIRIAM Registry The MIRIAM Registry, a by-product of the MIRIAM Guidelines, is a database of namespaces and associated information that is used in the creation of uniform…
• Nicolas Le Novère Nicolas Le Novère is a British and French biologist. His research focuses on modeling signaling pathways and developing tools to share mathematical models…
• Systems Biology Ontology The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in systems biology, and in particular in computational…
• SABIO-Reaction Kinetics Database SABIO-RK (System for the Analysis of Biochemical Pathways - Reaction Kinetics) is a web-accessible database storing information about biochemical reactions…
• SED-ML The Simulation Experiment Description Markup Language (SED-ML) is a representation format, based on XML, for the encoding and exchange of simulation description…
• JSBML JSBML (Java Systems Biology Markup Language) is an open-source Java (API) for the SBML (Systems Biology Markup Language ) format. Its API strives to attain…
• Identifiers.org Identifiers.org is a project providing stable and perennial identifiers for data records used in the Life Sciences. The identifiers are provided in the…
• Minimum information about a simulation experiment The minimum information about a simulation experiment (MIASE) is a list of the common set of information a modeller needs to enable the execution and reproducti…