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Everything about Annotation
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An annotation is extra information associated with a particular point in a document or other piece of information. It can be a note that includes a comment or explanation. Annotations are sometimes presented in the margin of book pages. For annotations of different digital media, see web annotation and text annotation. Wikipedia →
🧭 Start here: a 6-step reading path
- Read the overview: AnnotationA 5-minute orientation
- Skim a recent paper: DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)Influential work since 2022
- Pick up a classic book: Código de processo civil (1973)The most-reprinted book on the subject
- Read the landmark paper: Prokka: rapid prokaryotic genome annotationCited 19,238 times
- Go sideways: Knowledge extractionA closely related topic
- Go sideways: DBpediaA closely related topic
📖 Definitions
Noun A critical or explanatory commentary or analysis.
Noun A comment added to a text.
Noun The process of writing such comment or commentary.
Noun Metadata added to a document or program.
🗂️ The subject at a glance
🏆 Landmark papers (most cited)
Prokka: rapid prokaryotic genome annotation
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
NCBI prokaryotic genome annotation pipeline
KEGG as a reference resource for gene and protein annotation
DAVID: Database for Annotation, Visualization, and Integrated Discovery
🆕 Influential since 2022
DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
dbCAN3: automated carbohydrate-active enzyme and substrate annotation
ChatGPT outperforms crowd workers for text-annotation tasks
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
📚 Books worth reading
Código de processo civil (1973)Brazil · 1973
Acts of the General Assembly of the commonwealth of PennsylvaniaPennsylvania. · 1764
The marriage of Heaven and HellWilliam Blake · 1793- 📕Restatement of the law of contractsAmerican Law Institute. · 1928
- 📕Restatement of the law of agencyAmerican Law Institute. · 1933
The laws of contrast of colourM. E. Chevreul · 1857
Questioned documentsAlbert Sherman Osborn · 1910
Geschichte der deutschen SozialdemokratieFranz Mehring · 1897
Ranked by number of editions on Open Library, a rough measure of how lasting a book is.
🔗 Related topics
- Knowledge extraction Knowledge extraction is the creation of knowledge from structured (relational databases, XML) and unstructured (text, documents, images) sources. The resulting…
- DBpedia DBpedia (from "DB" for "database") is a project aiming to extract structured content from the information created in the Wikipedia project. This structured…
- Entity linking In natural language processing, entity linking, also referred to as named-entity disambiguation (NED), named-entity recognition and disambiguation (NERD)…
- Knowledge graph In knowledge representation and reasoning, a knowledge graph is a knowledge base that uses a graph-structured data model or topology to represent and operate…
- Linguistic Linked Open Data In natural language processing, linguistics, and neighboring fields, Linguistic Linked Open Data (LLOD) describes a method and an interdisciplinary community…
- UMBEL UMBEL (Upper Mapping and Binding Exchange Layer) is a logically organized knowledge graph of 34,000 concepts and entity types that can be used in information…
- Information extraction Information extraction (IE) is the task of automatically extracting structured information from unstructured and/or semi-structured machine-readable documents…
- International Semantic Web Conference The International Semantic Web Conference (ISWC) is a series of academic conferences and the premier international forum for the Semantic Web, Linked Data…